fasta_hmmsearch_rank_fastas

Run hmmsearch and output separate fasta files for top scoring hits to each profile

hmmersearchrankfasta

Description

Run hmmsearch and output separate fasta files for top scoring hits to each profile

name

description

pattern

The input channel containing hmm profiles
Structure: [ val(meta), path(hmm) ]

*.{hmm}

The input channel containing sequences to be searched and ranked

name

description

pattern

Channel containing the TSV file from ranking hmmsearch hits
Structure: [ val(meta), path(hmmrank) ]

*.hmmrank.tsv.gz

Channel containing subsets of sequences
Structure: [ val(meta), path(fasta) ]

*.fa.gz

File containing software versions
Structure: [ path(versions.yml) ]

versions.yml